Publications

January 2021 Briefings in Bioinformatics
DeepVF: a deep learning-based hybrid framework for identifying virulence factors using the stacking strategy
Cite Project Project
January 2021 mSystems
Component Parts of Bacteriophage Virions Accurately Defined by a Machine-Learning Approach Built on Evolutionary Features
Cite Project Project
January 2021 Nucleic Acids Research
BastionHub: a universal platform for integrating and analyzing substrates secreted by Gram-negative bacteria
BastionHub: a universal platform for integrating and analyzing substrates secreted by Gram-negative bacteria
Cite Project Project DOI PDF Server User map Dataset Guidance
January 2021 Nucleic Acids Research
AcrHub: an integrative hub for investigating, predicting and mapping anti-CRISPR proteins
AcrHub: an integrative hub for investigating, predicting and mapping anti-CRISPR proteins
Cite Project Project DOI PDF Server User map Dataset Guidance
January 2021 Nucleic Acids Research
AcrDB: a database of anti-CRISPR operons in prokaryotes and viruses
Cite
January 2020 Nature communications
The architecture and stabilisation of flagellotropic tailed bacteriophages
Cite Project
January 2020 Bioinformatics
PeNGaRoo, a combined gradient boosting and ensemble learning framework for predicting non-classical secreted proteins
Cite Project Project
January 2020 Nucleic acids research
PaCRISPR: a server for predicting and visualizing anti-CRISPR proteins
PaCRISPR: a server for predicting and visualizing anti-CRISPR proteins

A server for predicting and visualizing anti-CRISPR proteins. Predicted anti-CRISPRs can be further explored by interactive data visualizations on anti-CRISPR relationships, highlighting sequence similarity and phylogenetic considerations.
Cite Project DOI PDF Supplementary file Server User map Dataset Guidance
January 2020 Current Opinion in Microbiology
Mapping bacterial effector arsenals: in vivo and in silico approaches to defining the protein features dictating effector secretion by bacteria
Cite Project
January 2019 Briefings in bioinformatics
Systematic analysis and prediction of type IV secreted effector proteins by machine learning approaches
Systematic analysis and prediction of type IV secreted effector proteins by machine learning approaches
Cite Project
January 2019 Briefings in bioinformatics
Computational analysis and prediction of lysine malonylation sites by exploiting informative features in an integrative machine-learning framework
Cite Project Project
January 2019 Bioinformatics
Bastion3: a two-layer ensemble predictor of type III secreted effectors
Cite Project
January 2019 Frontiers in public health
An outbreak of carbapenem-resistant and hypervirulent Klebsiella pneumoniae in an intensive care unit of a major teaching hospital in Wenzhou, China
Cite Project
January 2018 PLoS biology
FusC, a member of the M16 protease family acquired by bacteria for iron piracy against plants
Cite Project
January 2018 Briefings in bioinformatics
Comprehensive assessment and performance improvement of effector protein predictors for bacterial secretion systems III, IV and VI
Cite Project
January 2018 Bioinformatics
Bastion6: a bioinformatics approach for accurate prediction of type VI secreted effectors
Bastion6: a bioinformatics approach for accurate prediction of type VI secreted effectors
Cite Project DOI PDF Supplementary file Server User map Dataset Guidance
January 2017 Scientific reports
SecretEPDB: a comprehensive web-based resource for secreted effector proteins of the bacterial types III, IV and VI secretion systems
Cite Project
January 2017 Bioinformatics
POSSUM: a bioinformatics toolkit for generating numerical sequence feature descriptors based on PSSM profiles
POSSUM: a bioinformatics toolkit for generating numerical sequence feature descriptors based on PSSM profiles
Cite Project Project DOI PDF Supplementary file Server User map Standalone toolkit Guidance
January 2017 Scientific reports
PhosphoPredict: A bioinformatics tool for prediction of human kinase-specific phosphorylation substrates and sites by integrating heterogeneous feature selection
Cite Project
January 2017 2017 IEEE International Symposium on Parallel and Distributed Processing with Applications and 2017 IEEE International Conference on Ubiquitous Computing and Communications (ISPA/IUCC)
A quantified forwarding strategy in ndn by integrating ant colony optimization into MADM
Cite Project
January 2016 2016 IEEE Trustcom/BigDataSE/ISPA
Intelligent forwarding strategy based on online machine learning in named data networking
Cite Project
January 2016 2016 IEEE International Conference on Communications (ICC)
Detecting spam comments posted in micro-blogs using the self-extensible spam dictionary
Cite Project
January 2015 2015 IEEE global communications conference (GLOBECOM)
Mdpf: An ndn probabilistic forwarding strategy based on maximizing deviation method
Cite Project
January 2015 2015 IEEE international conference on communications (ICC)
An entropy-based probabilistic forwarding strategy in named data networking
Cite Project